Search results for "Ruditapes philippinarum"

showing 4 items of 4 documents

Data from: Phylogenomics of Lophotrochozoa with consideration of systematic error

2021

Phylogenomic studies have improved understanding of deep metazoan phylogeny and show promise for resolving incongruences among analyses based on limited numbers of loci. One region of the animal tree that has been especially difficult to resolve, even with phylogenomic approaches, is relationships within Lophotrochozoa (the animal clade that includes molluscs, annelids, and flatworms among others). Lack of resolution in phylogenomic analyses could be due to insufficient phylogenetic signal, limitations in taxon and/or gene sampling, or systematic error. Here, we investigated why lophotrochozoan phylogeny has been such a difficult question to answer by identifying and reducing sources of sys…

Helobdella robustaGlycera dibranchiataMytilus edulisAnnelidaEntalina tetragonaLeptochiton asellusCerebratulus marginatusLoxosomella cf. viviparaGraptacme eboreaLineus longissimusmedicine and health careClymenella torquataRuditapes philippinarumNucella lapillusHaliotis rufescenslong branch attractionPlatyzoaBarentsia gracilisPriapulus caudatusLineus ruberAlitta virenssaturationProchaetoderma californicumLife SciencesPinctada fucataSchistosoma mansoniPolyzoaCephalothrix hongkongensisRhyssoplax olivaceusLoxosoma pectinaricolaPhascolosoma agassiziiAdineta vagaDrosophila melanogasterEntoproctaBugula neritinaPhoronis vancouverensisMedicineNovocrania anomalaVillosa lienosaDaphnia pulexSagitta sp.Pectinaria gouldiiSymbion americanusNuculana pernulaSepia esculentaEnucula tenuisSolemya velumLineus lacteusTubulanus polymorphus-StruckGnathostomula paradoxaBoccardia proboscideaMacellomenia schanderiLaevipilina hyalinaTubulanus polymorphus-HalanychBryozoaPomatoceros lamarckiiSepioteuthis lessonianaParanemertes peregrinaMalacobdella grossaHemithiris psittaceaLeptochiton rugatusTrochozoaBrachionus plicatilisSpathoderma clenchiLaqueus californicusPatella vulgataLottia giganteaCrepidula fornicataPhoronidaAplysia californicaGlottidia pyramidataPhoronis psammophilaSchmidtea mediterraneaAlexandromenia crassaBrachiopodaMegadasys sp.Octopus vulgarisCapitella teletaNeomenia carinatacompositional heterogeneityNemerteaPhenacolepas pulchellaGadila tolmieiMolluscaMacrodasys sp.Crassostrea gigasPedicellina cernuaTaenia pisiformisDosidicus gigasCephalothrix linearisSpiralia

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Data from: Phylogenomics of Lophotrochozoa with consideration of systematic error

2016

Helobdella robustaGlycera dibranchiataMytilus edulisAnnelidaEntalina tetragonaLeptochiton asellusCerebratulus marginatusLoxosomella cf. viviparaGraptacme eboreaLineus longissimusmedicine and health careClymenella torquataRuditapes philippinarumNucella lapillusHaliotis rufescenslong branch attractionPlatyzoaBarentsia gracilisPriapulus caudatusLineus ruberAlitta virenssaturationProchaetoderma californicumPinctada fucataSchistosoma mansoniLife sciencesPolyzoaCephalothrix hongkongensisRhyssoplax olivaceusLoxosoma pectinaricolaPhascolosoma agassiziiAdineta vagaDrosophila melanogasterEntoproctaBugula neritinaPhoronis vancouverensisMedicineNovocrania anomalaVillosa lienosaDaphnia pulexSagitta sp.Pectinaria gouldiiSymbion americanusNuculana pernulaSepia esculentaEnucula tenuisSolemya velumLineus lacteusTubulanus polymorphus-StruckGnathostomula paradoxaBoccardia proboscideaMacellomenia schanderiLaevipilina hyalinaTubulanus polymorphus-HalanychBryozoaPomatoceros lamarckiiSepioteuthis lessonianaParanemertes peregrinaMalacobdella grossaHemithiris psittaceaLeptochiton rugatusTrochozoaBrachionus plicatilisSpathoderma clenchiLaqueus californicusPatella vulgataLottia giganteaCrepidula fornicataPhoronidaAplysia californicaGlottidia pyramidataPhoronis psammophilaSchmidtea mediterraneaAlexandromenia crassaBrachiopodaMegadasys sp.Octopus vulgarisCapitella teletaNeomenia carinatacompositional heterogeneityNemerteaPhenacolepas pulchellaGadila tolmieiMolluscaMacrodasys sp.Crassostrea gigasPedicellina cernuaTaenia pisiformisDosidicus gigasCephalothrix linearisSpiralia

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Sodium provides unique insights into transgenerational effects of ocean acidification on bivalve shell formation

2016

Ocean acidification is likely to have profound impacts on marine bivalves, especially on their early life stages. Therefore, it is imperative to know whether and to what extent bivalves will be able to acclimate or adapt to an acidifying ocean over multiple generations. Here, we show that reduced seawater pH projected for the end of this century (i.e., pH 7.7) led to a significant decrease of shell production of newly settled juvenile Manila clams, Ruditapes philippinarum. However, juveniles from parents exposed to low pH grew significantly faster than those from parents grown at ambient pH, exhibiting a rapid transgenerational acclimation to an acidic environment. The sodium composition of…

Ocean Acidification International Coordination Centre (OA-ICC)Registration number of speciesSalinityTemperateinorganicAlkalinitySodium/Calcium ratioExperimentTemperature waterCarbon inorganic dissolvedRuditapes philippinarumCalculated using seacarb after Nisumaa et al 2010Aragonite saturation stateNorth PacificAlkalinity totalSalinity standard errortotalSodium Calcium ratiopHTemperaturePartial pressure of carbon dioxide (water) at sea surface temperature (wet air) standard errordissolvedAcid base regulationCarbonate ionLaboratory experimentPartial pressure of carbon dioxide (water) at sea surface temperature (wet air)standard errorContainers and aquaria 20 1000 L or 1 m 2Earth System ResearchContainers and aquaria (20-1000 L or < 1 m**2)Uniform resource locator link to referenceCalcite saturation statewaterGrowth MorphologyContainers and aquaria (20-1000 L or < 1 m**2)Alkalinity total standard errorBenthosUniform resource locator/link to referenceOcean Acidification International Coordination Centre OA ICCAnimaliaBicarbonate ionTypeTemperature water standard errorCalculated using seacarb after Nisumaa et al. (2010)SpeciespH standard errorGrowth rateCarbonate system computation flagAcid-base regulationFugacity of carbon dioxide (water) at sea surface temperature (wet air)CarbonTreatmentAragonite saturation state standard errorPartial pressure of carbon dioxide water at sea surface temperature wet airCarbon dioxideSample IDMolluscaGrowth/MorphologySingle speciesBenthic animalsFugacity of carbon dioxide water at sea surface temperature wet airCoast and continental shelf

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Seawater carbonate chemistry and growth, physiological performance of the Manila clam Ruditapes philippinarum

2018

Ocean acidification may interfere with the calcifying physiology of marine bivalves. Therefore, understanding their capacity for acclimation and adaption to low pH over multiple generations is crucial to make predictions about the fate of this economically and ecologically important fauna in an acidifying ocean. Transgenerational exposure to an acidification scenario projected by the end of the century (i.e., pH 7.7) has been shown to confer resilience to juvenile offspring of the Manila clam, Ruditapes philippinarum. However, whether, and to what extent, this resilience can persist into adulthood are unknown and the mechanisms driving transgenerational acclimation remain poorly understood.…

Ocean Acidification International Coordination Centre (OA-ICC)TemperateRegistration number of speciesCondition indexSalinityBicarbonate ion standard deviationinorganicAlkalinity total standard deviationAlkalinityCalculated using seacarb after Orr et al. (2018)Growth rate standard deviationFugacity of carbon dioxide in seawater standard deviationExperimentTemperature waterCarbon inorganic dissolvedRuditapes philippinarumCalculated using seacarb after Nisumaa et al 2010PercentageAragonite saturation stateNorth PacificAlkalinity totalδ13C dissolved inorganic carbon standard deviationtotalpHRespirationTemperaturedissolvedLaboratory experimentCarbonate ionPartial pressure of carbon dioxide (water) at sea surface temperature (wet air)Carbon dioxide standard deviationTemperature water standard deviationContainers and aquaria 20 1000 L or 1 m 2δ13C dissolved inorganic carbonEarth System Researchδ13CContainers and aquaria (20-1000 L or < 1 m**2)Metabolic rate of oxygen standard deviationstandard deviationUniform resource locator link to referenceCalcite saturation stateFugacity of carbon dioxide in seawaterwaterPartial pressure of carbon dioxideGrowth MorphologyContainers and aquaria (20-1000 L or < 1 m**2)Aragonite saturation state standard deviationBenthosUniform resource locator/link to referenceOther studied parameter or processSalinity standard deviationOcean Acidification International Coordination Centre OA ICCAnimaliaCarbon inorganic dissolved standard deviationCalcite saturation state standard deviationTypeBicarbonate ionCalculated using seacarb after Nisumaa et al. (2010)SpeciesGrowth rateCondition index standard deviationPartial pressure of carbon dioxide standard deviationMetabolic rate of oxygenCarbonate system computation flagpH standard deviationCarbonate ion standard deviationdissolved inorganic carbonCalculated using seacarb after Orr et al 2018Fugacity of carbon dioxide (water) at sea surface temperature (wet air)CarbonTreatmentPartial pressure of carbon dioxide water at sea surface temperature wet airCarbon dioxideMolluscaGrowth/MorphologySingle speciesFugacity of carbon dioxide water at sea surface temperature wet airBenthic animalsδ13C standard deviationCoast and continental shelf

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